Finally managed to get a picture of Jacob R – our bioinformatics Research at York undergraduate – at a recent lab gathering. Jacob has been with the lab since the summer of 2016.
Jeff Lozier and I have a perspective out on bee conservation genomics – check it out in Conservation Genetics. Yay, my first paper with Jeff! Was a fun experience.
I am very happy to report that I was awarded the Entomological Society of Canada’s Gordon C. Hewitt Award; awarded to researchers who have made an outstanding contribution to entomology in Canada within 12 years of their PhD [read the full citation in the September 2016 bulletin of the Society]. Charles Gordon Hewitt was an amazing Canadian entomologist and conservation biologist. His short and illustrious career included serving as Canada’s Dominion Entomologist, drafting Canada’s destructive insect and pest act in 1910, and aiding in the protection of Canada’s wildlife. More info on his career can be found on his wiki page.
I received the award during the recent International Congress of Entomology, held at Orlando Florida. It was a very special experience. Thank you ESC!
This past year has been just a giant whirlwind! So many things, so little time… especially for the blog. I am going to try to keep at it though, and what a better way to start than by introducing all of the awesome new students that have joined the lab this fall. Where do we start… how about with the newest grad students. We have 5 new grad students this term. Current MSc student Katie D will be defending her thesis on wasp population genomics (her data are so exciting, but more on the #wasplove in another blog) later this fall and will molt into her PhD skin, studying the population of African honey bees. Tanushree (PhD candidate), Harshil (MSc candidate and former Zayed lab undergrad) and Stephen (MSc candidate) will carry out research on the gencetics of colony level traits for Genome Canada’s BeeOmics project. We are also hosting Claudinéia Costa, a visiting PhD student from Dr. Tiago Mauricio Francoy’s lab at the University of Sao Paulo (Brazil). Claudinéia will be working with us on a fun orchid bee population genomics project… cool!
Ok, then there are the fabulous 5 undergrads that will be working with us this term. Leonardo (former RAY), Daniel (former NSERC USRA), and Jacob (former RAY) will be working as Research at York students this fall/winter term. Jacob and Jaafar will work as Research Assistants.
Then some familiar faces. Dr. Clement Kent has been back in the lab since last September, working as Senior Research Associate. Dr. Alivia Dey is also back as the BeeOmics project manager for the Zayedlab.
Finally, we have a sabbatical visitor – Dr. Charles Whitfield from the Department of Entomology at the University of Illinois.
Needless to say, the lab is brimming with excitement and energy. New faces, new data, new questions, and full steam ahead!
Multiple PhD positions in honey bee genomics and sociobiology at York University, Toronto.
Are you interested in genomics, population genetics, social insects and a Ph.D.?
The Zayed lab (http://zayedlab.apps01.yorku.ca/wordpress/) in the Department of Biology at York University (Toronto, Canada) is looking for enthusiastic new doctoral candidates in 2016 to work on one of several exciting projects:
1) BeeOMICs – Genome-Wide Association Studies – several positions
Funded by Genome Canada, the BeeOMICs team will apply genome-wide-association mapping and population genomic tools to study the genetics of 12 colony-level traits in honey bees. This will involve sequencing and analysis of 1,000 colony ‘genomes’. We seek applicants who bring interest and experience in SOME of the following fields: genomics, population genetics, and computing. There will be lots of opportunities to interact with members of the BeeOMICs team. Read more about the BeeOMICs project here: http://www.genomebc.ca/news-events/news-releases/2015/canadian-queens-sustaining-and-securing-canadas-honey-bees-using-omic-tools/
2) BeeOMICs – Modeling genetic load in social insects – 1 PhD position
We are looking for a PhD student that will work closely with Dr. Amro Zayed and Dr. Jianhong Wu (at York University’s Center for Disease Modeling) http://www.cdm.yorku.ca/wujh/content/about) to develop theory and models for understanding the genetic load in social insects. This will build upon some of our earlier work– see Zayed and Packer, 2005, PNAS 102:10742-10746.
3) BeeOMICs – Population genomics of African honey bees – 1 PhD position
We plan to sequence multiple genomes of all honey bee subspecies found in Africa. The dataset will provide a wealth of knowledge about patterns of natural selection in bee genomes and will help us understand the enigmatic biogeographic history of honey bees. It will also allow us to refine a diagnostic tool for detecting Africanized honey bees. Representative pubs include:
Harpur, B.A., Chapman, N.C., Krimus, L., Maciukiewicz, P., Sandhu, V., Sood, K., Lim, J., Rinderer, T.E., Allsopp, M.H., Oldroyd, B.P. and Zayed, A. (2015). Assessing patterns of admixture and ancestry in Canadian honey bees. Insectes Sociaux. 62:479-489.
Chapman, N.C., Harpur, B.A., Lim, J., Rinderer, T.E., Allsopp, M.H., Zayed, A., Oldroyd, B.P. (2015) A SNP test to identify Africanized honey bees via proportion of ‘African’ ancestry. Molecular Ecology Resources. DOI: 10.1111/1755-0998.
4) Comparative population genomics of social insects – multiple positions
Funded by an NSERC discovery grant, we plan on carrying comparative population genomic studies across 24 different species that represent different stages of social evolution. Lots of interesting questions to ask, including: What is the relationship between social evolution and genome evolution? Are there common patterns of adaptive evolution associated with the origin of castes and sociality – Hamilton’s proverbial ‘genes for altruism’ ? What kind of mutations underlie adaptive evolution in social insects ? (e.g. coding vs. regulatory, taxonomically-restricted genes vs. conserved genes), and so on…
Representative publications include:
Kapheim, K. M. et al. including Kent, C.F. and Zayed, (2015) A. Genomic signatures of evolutionary transitions from solitary to group living. Science, 348:1139-1143.
Kent, C.F. and Zayed, A. (2015). Population Genomic and Phylogenomic Insights into the Evolution of Physiology and Behaviour in Social Insects. Advances in Insect Physiology. 48:293-342.
Molodtsova, D., Harpur, B.A., Kent, C.F., Seevananthan, K., and Zayed, A. (2014). Pleiotropy constrains the evolution of protein but not regulatory sequences in a transcription regulatory network influencing complex social behaviours. Frontiers in Genetics, 5:431.
Harpur, B.A., Kent, C.F., Molodtsova, D., Lebon, J.M.D., Alqarni, A.S., Owayss, A.A., Zayed, A. 2014. Population genomics of the honey bee reveals strong signatures of positive selection on worker traits. PNAS. 111:2614-2619
Kent, C.F., Minaei, S., Harpur, B.A., and Zayed, A. 2012. Recombination is associated with the evolution of genome structure and worker behavior in honey bees. PNAS. 109:18012-18017.
Successful candidates will receive training in genomics, bioinformatics and sociobiology in a very collaborative environment. Toronto is a great city to live and work in. Funding if available for Canadian students; international students are welcome to apply provided they have access to scholarships from their home country. If interested in applying, please send your c.v., contacts for references, and a 1 page cover letter to email@example.com
Very happy that Erica Shenfeld, who carried out her honours thesis research on Bee Genetics, won the Department of Biology’s C.W. Fowle and B. Rozario prize, as well as the Mainguy Genetics Award.
The Fowel and Rozario prize is awarded to the most outstanding graduating student in Honours Biology as determined by the department. The award is based on grades, research potential and leadership activities within the department.
The Mainguy Genetics award is given to a 3rd or 4th year biology students who show extreme proficiency in Genetics, both in the laboratory and in the classroom.
Congrats Erica … you made us very proud!
May is a very fun time of the year. Spring is in full swing and the bees are happy. It is also a time when a fresh cohort of YorkU undergrads join the lab. This year we have two new summer NSERC USRA scholarship winners joining the lab, Danny and Pratik. We also have zayedlab veterans Harshil (research assistant, summer 2014, and Honors thesis 2014/15) and Research at York student Sani (bioinformatics research assistant) who will continue to work with us this summer.
Welcome and hoping for a very productive summer.
The bee community’s answer to the 12 fruit fly genomes…. The 10 bee genomes…. all the ACGT’s plus methylation and very cool social behaviour… take that Drosophila! 🙂 [who has Drosophila envy —> me]
My former postdoc Dr. Clement Kent and I were part of a large international effort, spearheaded by the Karen Kapheim and Gene Robinson from the University of Illinois, to sequence and study the genomes of 10 bee species that vary in terms of their social organization. The study was published in the journal Science last week. Our role was to study patterns of molecular evolution as a function of social organization and genome structure.
It was a lot of fun! The added bonus (in addition to a paper in Science) is that i am now a co-author with 50+ of my favourite bee researchers from around the world… Neat!
Anyways, check out the nice little write up on the article by TheScientist’s Ruth Williams
Happy to report that we played an important role in an international effort to develop a new diagnostic test for africanized ‘killer’ bees. Africanized bees invaded the southern US where Canadian beekeepers like to import queen bees. Older tests for telling if a bee is africanized or not are not reliable. We worked closely with Nadine Chapman and Ben Oldroyd from the University of Sydney’s famed social insect lab to develop a very accurate genetic test. PhD candidate Brock Harpur used our database of over 12 million mutations in the honey bee to pick diagnostic mutations that differ between African and European bees.
Chapman, N.C., Harpur, B.A., Lim, J., Rinderer, T.E., Allsopp, M.H., Zayed, A., Oldroyd, B.P. (2015) A SNP test to identify Africanized honey bees via proportion of ‘African’ ancestry. Molecular Ecology Resources. DOI: 10.1111/1755-0998.12411